Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch

Background  

Steroids are small molecule hormones derived from cholesterol. Steroids affect many tissues, including the brain. In the zebra finch, estrogenic steroids are particularly interesting because they masculinize the neural circuit that controls singing and their synthesis in the brain is modulated by experience. Here, we analyzed the zebra finch genome assembly to assess the content, conservation, and organization of genes that code for components of the estrogen-synthetic pathway and steroid nuclear receptors. Based on these analyses, we also investigated neural expression of a cholesterol transport protein gene in the context of song neurobiology.     

Electrically driven multiaxis rotational dynamics of colloidal platelets in nematic liquid crystals

We describe field-induced multiaxis rotations of colloids in a nematic liquid crystal. Anchoring of the nematic director to the colloidal platelet's surface and interplay of dielectric and elastic energies enable robust control over colloid orientation that cannot be achieved in isotropic liquids. Because of the anisotropy of the fluid and the platelike shape of particles, the colloids can be forced to rotate about four different rotational axes even for a fixed direction of the applied field. The time scale of these unexpected voltage-dependent dynamics varies over four orders of magnitude (10?2-102 s) and promises a number of novel electro-optic, photonic, and display applications.     

The Complete Dirichlet-to-Neumann Map for Differential Forms

The Dirichlet-to-Neumann map for differential forms on a Riemannian manifold with boundary is a generalization of the classical Dirichlet-to-Neumann map which arises in the problem of Electrical Impedance Tomography. We synthesize the two different approaches to defining this operator by giving an invariant definition of the complete Dirichlet-to-Neumann map for differential forms in terms of two linear operators Φ and Ψ. The pair (Φ,Ψ) is equivalent to Joshi and Lionheart’s operator Π and determines Belishev and Sharafutdinov’s operator Λ. We show that the Betti numbers of the manifold are determined by Φ and that Ψ determines a chain complex whose homologies are explicitly related to the cohomology groups of the manifold.     

Continuum modeling of twinning,amorphization, and fracture: theory and numerical simulations

A continuum mechanical theory is used to model physical mechanisms of twinning, solid-solid phase transformations, and failure by cavitation and shear fracture. Such a sequence of mechanisms has been observed in atomic simulations and/or experiments on the ceramic boron carbide. In the present modeling approach, geometric quantities such as the metric tensor and connection coefficients can depend on one or more director vectors, also called internal state vectors. After development of the general nonlinear theory, a first problem class considers simple shear deformation of a single crystal of this material. For homogeneous fields or stress-free states, algebraic systems or ordinary differential equations are obtained that can be solved by numerical iteration. Results are in general agreement with atomic simulation, without introduction of fitted parameters. The second class of problems addresses the more complex mechanics of heterogeneous deformation and stress states involved in deformation and failure of polycrystals. Finite element calculations, in which individual grains in a three-dimensional polycrystal are fully resolved, invoke a partially linearized version of the theory. Results provide new insight into effects of crystal morphology, activity or inactivity of different inelasticity mechanisms, and imposed deformation histories on strength and failure of the aggregate under compression and shear. The importance of incorporation of inelastic shear deformation in realistic models of amorphization of boron carbide is noted, as is a greater reduction in overall strength of polycrystals containing one or a few dominant flaws rather than many diffusely distributed microcracks.     

Total Synthesis of Tricolorin A

Tricolorin A (1), a structurally amazing resin glycoside with promising bioactivities from Ipomoea tricolor cav. (convolvulaceae), was synthesized in a total of 45 steps, with the longest linear sequence of 20 steps and overall yield of 0.65% from D-mannitol. The AB disaccharide 19-membered lactone 2 was constructured by a regioselective macrolactonization using Corey-Nicolaou protocol. The macrolactone tetrasaccharide 33 was realized either by "one-pot two-step" glycosylation procedure or by a stepwise assembly employing the "armed-disarmed" glycosylation strategy.     

Conformational switching between diastereoisomeric atropisomers of arenedicarboxamides induced by complexation with Lewis acids

Tertiary diamides of xanthene-1,8-dicarboxylic acid and biphenyl-2,2'-dicarboxylic acid exhibit a thermodynamic preference for anti stereochemistry which is inverted in the presence of Ti- or Sn-based Lewis acids, allowing interconversion between kinetically stable syn and anti diastereoisomeric atropisomers.     

Metal-specific allosteric activation and deactivation of a diamine

The reaction of a potentially tetradentate bis(pyridyl-thiazole) ligand with acetone is allosterically activated upon complexation with Cd(II) but deactivated by reaction with Cu(I), demonstrating metal-specific allosteric controlled reactivity.     

An innovative molybdenum column liner for oxygen and hydrogen stable isotope analysis by pyrolysis

The most widely used method for pyrolysing samples for hydrogen or oxygen isotopic analysis involves heating them to greater than 1300 degrees C in a helium stream passed through a glassy carbon tube in an alumina casing. There are a number of difficulties with this. Glassy carbon tubes are expensive and interaction between the carbon tube and the outer casing produces unwanted carbon monoxide by reduction of the alumina at high temperatures. The latter effect is overwhelming if temperatures of 1400 degrees C or greater are used for pyrolysis. We experimented with lining alumina casings with pure molybdenum sheet. It is relatively cheap, conforms well to the interior of the reactor tube (to avoid carrier and sample bypassing of the carbon pack), resists high temperatures and neither oxidises excessively nor absorbs the gases. The main disadvantages are that silver sample cups must be used and that the molybdenum degrades over time by formation of the carbide. We can maintain sharp peaks, high precision and good accuracy over more than 700 solid samples for both hydrogen and oxygen. The reactors last longer for water injections. The molybdenum in the columns does not contribute greatly to memory effects. The precision of analysis is dependent on other factors as well as the pyrolysis column, but for oxygen we typically achieve approximately <0.2 per thousand (sucrose), <0.25 per thousand (water) and <0.25 per thousand (leaf), sometimes using only a linear correction of drift, after dividing the run into 1 to 3 segments.